Thread by @RajlabN

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

71.1% XBB.1.5
3.0% XBB.1.5.15
2.8% XBB.1.9.1
1.5% XBB.1.5.13
1.4% XBB.1.5.17
1.4% BQ.1.1
1.3% XBB.1.5.1
1.1% XBB.1.16

Tracker: tinyurl.com/mryj4uu7
Updated: 03/24/2023

1/n

Sequence count by US State

#California has submitted a big share of sequences with specimen collection dates on or after 03/09/2023

XBB.1.5 is still at the top spot;
followed by XBB.1.9.1 & XBB.1.5.15

XBB.1.16.1 is 1.1% and its child XBB.1.16.1 is circulating around 0.5%
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Granular details -#VariantDashboard #USA #15DayTrends

XBB.1.5* (VOI - @WHO) is still ahead of the other lineages!

3/n

.@CDCgov updated variant proportions estimates on 03/24/2023 (updated every Friday)

XBB.1.9.1 (parent of EG.1*) makes an entrance!

Prudent to start separately tracking XBB.1.5.13 (parent of EK.1* and EK.2*) and XBB.1.16

https://twitter.com/RajlabN/status/1639272802111954946

4/n

Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations. Get updated if you haven't already!

public.tableau.com/app/profile/ra…

5/n

USA Airport surveillance update #15DayTrends

143 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)

*Includes pooled swabs; Many bad QC seqs

6/n

#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

[Looks like data entry error in DE hospital data]

7/n

#COVID19 #Hospitalizations in the #UnitedStates

>60 yr old & immunocompromised
Have a good look at @CDCgov info on #Boosters!

#Ventilate Indoor spaces

Sick? --> Wear a good quality #Mask!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

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Circulating recombinant lineages - USA #15DayTrends

XBB.1.5* is still the top recombinant in circulation!

9/n

Status of the latest #COVID19 Wave in #California

Slight increase in hospitalizations

Top circulating lineages in CA (#15DayTrends)

XBB.1.5 (69.6%)
XBB.1.5.15 (5.8%)
XBB.1.9.1 (5.0%)
XBB.1.16 (2.4%)
BQ.1.1 (1.6%)
XBB.1.5.13 (1.6%)
XBB.1.9.2 (1.3%)

10/n

Status of the latest #COVID19 Wave in #NewYork

Top circulating lineages in NY (#15DayTrends)

XBB.1.5 (69.5%)
BQ.1.1 (2.7%)
XBB.1.5.1 (2.7%)
XBB.1.5.13 (2.1%)
XBB.1.5.15 (2.1%)
XBB.1.5.17 (2.1%)
XBB.1.9.1 (1.6%)
..
XBB.1.16 (0.5%)

11/n

Status of the latest #COVID19 Wave in #Washington

Slight increase in hospitalizations!

Top circulating lineages in WA (#15DayTrends)

XBB.1.5 (56.6%)
XBB.1.5.15 (7.2%)
XBB.1.9.2 (7.2%)
XBB.1.16 (4.8%)
BQ.1.1.32 (3.6%)
BQ.1.1 (2.4%)
CH.1.1 (2.4%)

12/n